PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_F0B0E6B0A.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 674aa    MW: 78237.6 Da    PI: 6.9716
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_F0B0E6B0A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.16.1e-1864149191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY++YA++ GF v ++++++  +++  t  t+ C+++gk++ + k+   + +++++tr++C ak + +++  +++++t++ leHnH+
  Traes_4BL_F0B0E6B0A.2  64 RFYKAYARKKGFGVIRRTTRHG-EDKMLTYFTLACNRQGKAQFSAKN---SFKPNPSTRMQCPAKSNFSRR-GENFCITTVTLEHNHP 146
                            5**************9998887.7888****************9998...999*****************9.9**************9 PP

                   FAR1  89 lap 91 
                            ++p
  Traes_4BL_F0B0E6B0A.2 147 ISP 149
                            875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-1564149IPR004330FAR1 DNA binding domain
PfamPF105515.4E-35266360IPR018289MULE transposase domain
PROSITE profilePS509669.433555593IPR007527Zinc finger, SWIM-type
PfamPF044344.2E-4563589IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-4568595IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MEPDLTLDEV AEQNRSAPDE EDEDAFIVEE IGDSSDDRQR QAEPTVMLEP KKGMMFSSED  60
DAVRFYKAYA RKKGFGVIRR TTRHGEDKML TYFTLACNRQ GKAQFSAKNS FKPNPSTRMQ  120
CPAKSNFSRR GENFCITTVT LEHNHPISPS KARFLRCHKK VDLHSKRRLE LNDQAGARMN  180
TNFGSPVMEA GNLEFGEKEC TNYLQEKRSL KLGAGDAHAL YQYFLRMQSK DPAFFHVMDV  240
AEDGRLRNVF WADARSRAAY ESYWDVITFD TTYLTNKYRI PLATFVGVNH HGESVLLGCG  300
LLSNEDTETF VWLFKSWLCC MSCKPPNAIV TDQCKPMQNA IEEVFPQARH RWCTCHIMKK  360
IPENLSGYEN IKSSLSNVVY DSLTKHGFDK AWVEMINKYD LQDNEWLAGL YDNKNLWVPA  420
YVKDTFWAGM SSTKRSESVN AFFDGYVNAR TTLKQFVEQY ENALREKVEK ENKADSKSFQ  480
EQIPCITHYD FERQFQAAYT TAKFKEFQDQ LRGKIYCYPT QLNKEGSVFT FGVREDSKIF  540
CEGEDGKRKE KRVILEFIVL FNQGECDVQC MCRLFEFRGI LCSHIISVLA LMEITDVPSR  600
YILQRWRKDI KRKHTFVRCF YDDMIDTQVV QRYDNLCKHS HEVAENGAES DALHDLVMDG  660
LNELQRKIDA YRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3897111e-170HQ389711.1 Triticum aestivum clone UCDTA00162 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756066.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLW5E8940.0W5E894_WHEAT; Uncharacterized protein
STRINGBRADI2G36810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-126FAR1 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]